Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs142856179 | chr9:132292621 | C/T | 0 | 483 | 16.13 | 15.17 | 9.57 | KM Plot |
| THCA | rs142885610 | chr19:43564356 | A/G | 0.000237 | 489 | 15.3 | 18.93 | 10.08 | KM Plot |
| THCA | rs142924983 | chr1:224372196 | GTGTT/G | 0.000207 | 479 | 16.3 | 15.7 | 13.8 | KM Plot |
| THCA | rs142954210 | chr11:57059887 | G/A | 3.25E-11 | 486 | 16.23 | 14.73 | 15.58 | KM Plot |
| THCA | rs142954670 | chr1:48797415 | CAAG/C | 7.39E-5 | 489 | 17.53 | 14.8 | 14.9 | KM Plot |
| THCA | rs142965864 | chr14:59619710 | T/TGGATAA | 4.24E-10 | 490 | 15.9 | 16.4 | 6.83 | KM Plot |
| THCA | rs142986202 | chr6:119156234 | A/T | 0.000266 | 484 | 16.23 | 14.27 | 21.77 | KM Plot |
| THCA | rs143042307 | chr19:43571007 | GA/G | 0.000246 | 486 | 15.32 | 18.93 | 10.08 | KM Plot |
| THCA | rs143112647 | chr19:43564993 | T/C | 0.000267 | 483 | 15.27 | 19.57 | 10.08 | KM Plot |
| THCA | rs143118549 | chr7:29813865 | CTT/C | 7.95E-6 | 488 | 15.97 | 12.97 | 21.35 | KM Plot |
| THCA | rs143156403 | chr1:220761002 | G/A | 2.55E-5 | 489 | 15.9 | 16.8 | 0.23 | KM Plot |
| THCA | rs143332221 | chr3:139259248 | CAATA/C | 3.31E-5 | 490 | 15.9 | 17.07 | 13.08 | KM Plot |
| THCA | rs143383910 | chr1:91764488 | C/T | 8.35E-6 | 487 | 15.63 | 17.03 | 17.77 | KM Plot |
| THCA | rs143389465 | chr10:81847690 | CAATGT/C | 0.000145 | 488 | 15.97 | 16.07 | 9.77 | KM Plot |
| THCA | rs143438352 | chr1:41663367 | T/TA | 3.3E-7 | 485 | 14.93 | 17.77 | 17.47 | KM Plot |